Modeling Tumor Growth and Angiogenesis

Apresentação em tema: "Modeling Tumor Growth and Angiogenesis"— Transcrição da apresentação:

1 Modeling Tumor Growth and Angiogenesis
The Physics in Biology Modeling Tumor Growth and Angiogenesis Rui Travasso Centro de Física Computacional Universidade de Coimbra

2 ? Mass Number of Particles Physics Today G. Relativity Classical Mech.
Material Properties Superconductivity Superfluidity Turbulence Chaos Life Consciousness Social Relations G. Relativity Quantum Mech. Classical Mech. galaxy 1040 black hole 1031 Sun 1030 Earth 1024 Man 100 dust 10-12 DNA 10-21 atoms 10-27 electrons 10-31

3 Physics in Biology Physics is needed
Physical processes entangled with biology Tumor growth Embryonic development Consciousness Interdisciplinary subject Physics Biology Mathematics Chemistry Informatics

4 Simple Systems Liquid membranes Canham-Helfrish energy
Minimization of energy provided surface and volume constant

5 Curvature Energy Relevant
Influence of changing c0 Constant: pearling instability Gradient: tube formation

6 So? Simple models present rich behavior Biologically relevant
Mechanical effects are important in cell behaviour Red blood cells change mechanical properties if patient has malaria Organization of endothelial cells through mechanical adhesion But Insight is important but not sufficient Interdisciplinary study is essential for advance of field

7 Cancer and Physics Physics important in developing imaging tools for detection and following tumor growth but recently... Physics may be important for understanding tumor growth Physics meets Biology meets Chemistry Mechanical interactions, viscoelastic dynamics, protein diffusion, chemical reactions, gene regulatory networks, population dynamics, evolution Physics World, June 2010

8 Crescimento de Tumores - Mutações
Fase 1: Mutações genéticas Genes que regulam processos essenciais Ciclo celular  Reprodução descontrolada Sistemas de reparação do DNA e de proteínas Perda de mecanismo de morte programada

9 Crescimento de Tumores - Tecido
Fase 2: Interacção com o tecido celular Células cancerígenas inibem células imunitárias Ou recrutam células imunitárias (que recrutam vasos sanguíneos) Sobrevivem em condições adversas (ambiente ácido e baixos níveis de oxigénio) Célula Tumoral Célula do sist. imunitário

10 Crescimento de Tumores - Caderinas
Fase 3: “Cadherin switch” Células interagem com vizinhas através de proteínas da membrana Caderinas Mutação deste mecanismo pode levar a altas taxas de proliferação mesmo quando densidade celular alta.

11 Crescimento de Tumores - Esferóides
Fase 4: Células cancerígenas ganham forma: Esferóide Difusão macroscópica de células Formação de zonas necróticas Tumor com diâmetro 1-2 mm Zona Necrótica Reprodução Descontrolada Células Saudáveis Necroticas Quiescentes Proliferativas Alta Pressão

12 Crescimento de Tumores - Angiogénese
Tumor necessita nutrientes para crescer Busca activa de nutrientes Fase 5: “Angiogenic switch” Segregação de proteínas que promovem formação de novos vasos sanguíneos Rede vascular aberrante M. D. Anderson Cancer Center, Univ. of Texas

13 Crescimento de Tumores - Metástase
Fase 6: Metástase Células cancerígenas entram na circulação sanguínea Invasão de regiões saudáveis Pulmão Fígado

14 Alguns Tópicos sobre Tumores
Reprodução desregulada de células cancerínenas Grande diversidade de material genético das células Maior adaptabilidade Tumor vive num ambiente que lhe é extremamente hostil A destruição do hospitaleiro é uma vitória da adaptação. Infelizmente isso significa a morte do tumor também Vasos saguíneos frágeis O tumor sangra Angiogénesis contínua O tumor é uma ferida que não sara

15 Understanding Tumors Through Modeling
Effect of pressure inside tumors in affecting circulation Vessel collapse Tumor surface instabilities as a function of limitations in transport of nutrients May lead to phenotypic alterations Balance between cell-cell adhesion and nutrient delivery Tumor adaptability and tumor stem cells Guide treatment Use of modeling as a tool for predicting patient-specific evolution and treatment of tumors

16 Tumor Modeling Many models Review article: Nonlinearity, 23, R1 (2010)
578 references Each paper introduces different model for a specific application Classification of models Discrete: Cellular automata, Agent based, ... Continuous: Multiphase, Interface focused, ...

17 Shirinifard et al, PLoS One, 4, e7190
Discrete Models Focus on individual cells Mutations Contact forces Cell division Movement and growth Gene regulatory networks Advantage Some parameters may be obtained from single cell experiments Limitations Challenging to simulate millions of cells Large number of parameters (which ones are controlling factors?) Shirinifard et al, PLoS One, 4, e7190

18 Preziosi et al, J.Math.Biol., 58, 625
Continuous Models Interface focused Map tumor surface behavior to existing interface models In general do not include biological details Multiphase modeling From mixture theory Consider different components Conservation laws (mass, momentum) Constitutive relations specific for each component Thermodynamic consistency Possibility of including biological processes Fewer parameters than discrete methods Preziosi et al, J.Math.Biol., 58, 625

19 Phase-Field Models = 1 = -1 Approach to moving boundary problems
Phases associated with value of f Interface implies  = 0 Diffuse interface Original problem obtained when e → 0 Dynamics of f Can be derived from a free energy F[,] Non-conserved order parameter: Allen-Cahn equation Conserved order parameter: Cahn-Hilliard equation Phase 1 Phase 2 = -1 = 1  f  1 -1

20 Travasso, Castro, Oliveira, Phil. Mag. (2011)
Examples  Canham-Helfrisch energy  Dendritic growth  Phase separation of elastic phases  Phase-field model in tumor growth Travasso, Castro, Oliveira, Phil. Mag. (2011)

21 Example of Multiphase and Phase-Field
A multiphase model Cristini et al, J.Math.Biol., 58, 723 (2009) Mass balance for each component Momentum conservation Constitutive Relations Incompressibility

22 Example of Multiphase and Phase-Field
Formation of ramified structures More dramatic at low proliferation rate Fingering occurs at zero chemotaxis Instability driven by non-linear mobility Cristini et al, J.Math.Biol., 58, 723 (2009)

23 Therefore... Phase-Field is focused at the interface
Link between phase-field and multiphase Further reduction of parameters Variability of existing phase-field models lead to possibility of direct application in tumor growth Able to answer questions on the evolution of tumor size BUT... Do not include competing populations of tumor cells or mutations Hybrid models are a possible solution

24 Tumor Growth - Competition - Evolution
Deregulated proliferation Mutations Darwin selection Metabolism and migration Anaerobic matabolism 2 ATP instead of 36 No need of Oxygen Produces acid Helps migration Prevailing phenotype Acid resistant Acid Gerlee, Anderson, J Theor Biol 2007

25 Tumor Growth - Angiogenesis Switch - Vascular Phase
The tumor promotes the development of nearby vessels to have oxygen Challenging simulations Many parameters Cell based Continuous Hybrid Chaplain et al, Annu Rev Biomed Eng 2006 MackLin et al, J Math Biol 2009

26 Angiogenesis Sprouting of new blood vessels from existing ones
Relevant in varied situations Morphogenesis Inflammation Wound healing Neoplasms Diabetic Retinopathy For tumors Altered vessel network Dense, no hierarchical structure Capillaries are fragile, permeable, with variable diameter Capillary network carries both nutrients and drugs Gerhardt et al, Cell (2003) Lee et al, Cell (2007)

27 Phase-field Component
Two types of cells Tip cells are special Have filopodia Follow gradients of VEGF Produce MMPs which degrade ECM Construct path Do not proliferate Stalk cells Proliferation regulated by VEGF Not diggers Follow tip cell created pathway Gerhardt et al, Cell (2003) Agent Based Component Gerhardt et al, Cell (2003) Phase-field Component

28 Angiogenesis in a Nutshell
Capillaries are constituted by Endothelial cells Pericites, muscle cells Endothelial cells Pericites, smooth muscle cells… VEGF  VEGF weakens capillary wall  Endothelial cells may divide  Cells follow VEGF gradient  The first cell is activated and opens way in ECM Meyer et al, Am.J.Path. (1997)  Cells organize to form lumen  Blood flows when capillaries form loops  Blood reorganizes network

29 The penetration length of
The Model Two equations Diffusion: concentration of VEGF, T Phase-Field: order parameter dynamics Tip cell Characteristic radius Rc Perfect Notch signaling Introduced when T > Tc Velocity:  regulates the proliferation and D the chemotaxis The penetration length of T inside the capillary is given by D  = 1 inside capillary  = -1 outside capillary Ginzburg-Landau free energy Chemical potential Cahn-Hilliard dynamics Surface tension driven, bulk material conservation T

30 Simulation Starting configuration Capillary close to tissue in hypoxia
Concentration of VEGF at hypoxic cells constant Capillary Cells in hypoxia  Blood vessel network emerge 

31 Proliferation Higher proliferation rate leads to thicker and ramified vessels Low Proliferation High Proliferation

32 Chemotaxis Response Higher tip cell velocity leads to thinner and more ramified vessels Low Chemotaxis High Chemotaxis

33 VEGF Prodution Higher production of VEGF leads to more vessels but not thicker vessels Low VEGF High VEGF Gerhardt et al., Develop. Biol. (2003)

34 Matrix Metalloproteinase
MMPs implementation: Heavy VEGF isoforms get bound to matrix if cMMP high cMMP high in a radius RMMP of tumor cell Diffusion in function of Th Formation of thick vessels Thin vessel merging MMP-9 Inhibition Th D high cMMP low cMMP MMP-9 Overexpressed Rodriguez-Manzaneque et al, PNAS (2001)

35 Insight is important but not sufficient
Taxa de proliferação Dependente do meio (VEGF, Ang-2)? Como? Propriedades dos tecidos Tecido como meio viscoelástico Permeabilidade e elasticidade dos vasos Metabolismo das células Possibilidade de respiração anaeróbia? Em que circunstâncias? Influencia do meio ácido na viabilidade das células Transporte de proteínas Reacções químicas As células tumorais são de diferentes tipos Dinâmica de populações Evolução

36 Interdisciplinaridade
A Física poderá ajudar, mas como um elemento de um esforço interdisciplinar Integração de técnicas e métodos de diferentes disciplinas Simulação Morfogénese Tumores Pólipos Retinopatia Lab in vitro Lab in vivo Dados Clínicos medição exp. de parâmetros novas hipóteses e experiências previsões de crescimento vascular termos relevantes in vivo acompanhamento clínico individualizado observações clínicas

37 Conclusion Physics required to tackle problems in Biology New insights
High Pressure Conclusion Physics required to tackle problems in Biology New insights New therapies Interdisciplinary context Modeling tumor growth Variety of modeling techniques Hybrid models are able to integrate in a continuous description cell based processes essential in tumor growth and angiogenesis Hybrid model for angiogenesis with phase-field component Proliferation rate and matrix dependent tip cell velocity regulate capillary network morphology High production VEGF levels lead to increased vessel density Bio-avaibility of VEGF determines network Gerhardt et al, Cell (2003)

38 A Pretty One