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Biodiversity Informatics: CRIAs Experience Dora Ann Lange Canhos

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Apresentação em tema: "Biodiversity Informatics: CRIAs Experience Dora Ann Lange Canhos"— Transcrição da apresentação:

1 Biodiversity Informatics: CRIAs Experience Dora Ann Lange Canhos

2 Institutional Mission Dissemination of scientific and technological information and the promotion of education with a view of contributing towards a more sustainable use of Brazil's natural resources.

3 Aim Make scientific data and information useful and useable in a way that it can be incorporated in the definition of local, regional and national strategies for conservation and sustainable use of natural resources.

4 data information knowledge action Challenge: increase the use of scientific data about biodiversity real world observation Decision making conservation managing sustainable use restoration, rehabilitation Policies and Strategies government industry individuals

5 Building knowledge about biodiversity Collective, multi and inter-disciplinary Requires a global cooperative environment Depends on a comparative data and knowledge base

6 Challenges for biodiversity informatics Technical standardization, integration, validation, storage, recovery, analysis, synthesis, and dissemination of environmental data and information usefulness to non specialist communities Social help to promote cultural changes concerning data sharing establish partnerships promote open and free access to data on the Internet Sustainability project based versus long term support

7 CRIAs Focus: biodiversity informatics Data Focus on species and specimen data Content: through partnerships Freely and openly available information systems Tools: data providers Interoperability Data cleaning Data visualization Monitoring Tools: use Species distribution modeling

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11 BIOTA/FAPESP The Virtual Institute of Biodiversity Overall aim: inventory and characterize the biodiversity of the State of São Paulo, and define the mechanisms for its conservation and sustainable use. SinBiota (Atlas) SinBiota (Atlas) Biota Neotropica Biota Neotropica speciesLink speciesLink

12 April/2006 Projects 76 Authors 755 Users 219 Surveys12,396 names 90,504 unique 10,386 names Environmental Information System: field surveys

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14 Web Interface Biota program researcher Database Maps User Map service Web server Field records and associated species list

15 Atlas SinBiota

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20 Collections at Smithsonian, NMNH Photos: Chip Clark

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22 speciesLink site Presentation Layer speciesLink site Presentation Layer DiGIR Portal Data Provider PHP Collection Management System SQL Collection A Data Postgres Provider PHP Mirror SOAP server SQL Regional Server Data spLinker Java Collection Management System SQL Collection B Data Repository Data spLinker Java Collection Management System SQL Collection C Data Repository Lib DiGir Lib DiGir Slow or unstable connectivity Fast and stable connectivity

23 Data Migration Client Platform independent (java) Connects to any database accessible via JDBC (simple text files are also supported) Complete control over data Low traffic Possibility to filter sensitive data using a regular expression

24 Servidor Regional Z M M ZB B Z Z Z Z B B B B B M M Herbário do Instituto Agronômico de Campinas Herbário da UNICAMP, Campinas Coleção de Acari Museu de Zoologia, ESALQ, Piracicaba Herbário do Departamento De Ciências Biológicas da ESALQ, Piracicaba Herbário da USP, São Paulo Coleção de Peixes Museu de Zoologia da USP, São Paulo Coleção de Fungos Instituto de Botânica, São Paulo Coleção de Algas Instituto de Botânica, São Paulo Coleção de Fanerógamas Herbário do Instituto de Botânica, São Paulo Coleção de Peixes Dept. Zoologia e Botânica, UNESP, São José do Rio Preto Coleção de Acari Dept. Zoologia e Botânica, UNESP, São José do Rio Preto Coleção de Peixes do Laboratório de Ictiologia, USP, Ribeirão Preto Col. Culturas de Fitobactérias Lab. De Bacteriologia Vegetal Instituto Biológico, Campinas SinBiota Sistema de Informação Ambiental do Programa Biota - Fapesp Coleção de Microrganismos de Ambiente e Indústria, UNICAMP Campinas Z Coleção de Anfíbios Dept. Zoologia e Botânica, UNESP, São José do Rio Preto Z Coleção de Quirópteros Dept. Zoologia e Botânica, UNESP, São José do Rio Preto Servidor Regional B Herbário do Instituto de Biociências, UNESP, Botucatu Z B Herbário do Instituto de Biociências, UNESP Rio Claro Coleção de Anfíbios do Instituto de Biociências UNESP, Rio Claro B Herbário de Ilha Solteira, UNESP Ilha Solteira Z Coleção do Museu de Entomologia da FEIS/UNESP Ilha Solteira Coleção Científica de Aranhas do Dept. Zoologia e Botânica, UNESP, Botucatu Z B Herbário Dom Bento Pickel do Instituto Florestal, São Paulo B Herbário do Jardim Botânico do Rio de Janeiro

25 speciesLink – splink.cria.org.br data providers (collections) have full control over their data (add, modify, remove) curators dont have to change their routine or system because of the network and have complete liberty in selecting the software they want to use filters were developed to enable curators to block sensitive data tools were developed to help curators with data cleaning, visualization,... a monitoring system accessible on the internet was developed study cases with ecological niche modeling were developed (data use)

26 Information management Biological collections: what, where, who, when Tools: Managers (system, project, data): monitoring, indicators Provider: data cleaning; spatial visualization, collection profile, distribution,... User: search, geographic distribution, modeling

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36 Partners in Brazil

37 International Partners Global Biodiversity Information Facility (GBIF) Kansas University California Academy of Science Museum of Vertebrate Zoology, Berkeley Biodiversity World Research groups from Australia and Europe

38 Centro de Referência em Informação Ambiental Obrigada. Dora Ann Lange Canhos


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